- name: picard collectmultiplemetrics
  command: nextflow run ./tests/software/picard/collectmultiplemetrics -entry test_picard_collectmultiplemetrics -c tests/config/nextflow.config
  tags:
    - picard
    - picard_collectmultiplemetrics
  files:
    # These can't be md5'd consistently
    - path: output/picard/test.CollectMultipleMetrics.alignment_summary_metrics
    - path: output/picard/test.CollectMultipleMetrics.base_distribution_by_cycle.pdf
    - path: output/picard/test.CollectMultipleMetrics.base_distribution_by_cycle_metrics
    - path: output/picard/test.CollectMultipleMetrics.insert_size_histogram.pdf
    - path: output/picard/test.CollectMultipleMetrics.insert_size_metrics
    - path: output/picard/test.CollectMultipleMetrics.quality_by_cycle.pdf
    - path: output/picard/test.CollectMultipleMetrics.quality_by_cycle_metrics
    - path: output/picard/test.CollectMultipleMetrics.quality_distribution.pdf
    - path: output/picard/test.CollectMultipleMetrics.quality_distribution_metrics