- name: stringtie merge forward-strand
  command: nextflow run ./tests/modules/stringtie/merge/ -entry test_stringtie_forward_merge -c tests/config/nextflow.config
  tags:
    - stringtie
    - stringtie/merge
  files:
    - path: ./output/stringtie/stringtie.merged.gtf
      contains:
      - 'stringtie'
      - 'merge'
      - 'chr22'

- name: stringtie merge reverse-strand
  command: nextflow run ./tests/modules/stringtie/merge/ -entry test_stringtie_reverse_merge -c tests/config/nextflow.config
  tags:
    - stringtie
    - stringtie/merge
  files:
    - path: ./output/stringtie/stringtie.merged.gtf
      contains:
      - 'stringtie'
      - 'merge'
      - 'chr22'