params {
    outdir = "output/"
    publish_dir_mode = "copy"
    enable_conda = false

    clip_r1 = 0
    clip_r2 = 0
    three_prime_clip_r1 = 0
    three_prime_clip_r2 = 0
}

profiles {
    conda  {
        params.enable_conda = true
    }
    docker {
        docker.enabled = true
        docker.runOptions = '-u \$(id -u):\$(id -g)'
    }
    singularity {
        singularity.enabled = true
        singularity.autoMounts = true
    }
}