- name: star align single-end
  command: nextflow run ./tests/software/star/align -entry test_star_alignment_single_end -c tests/config/nextflow.config
  tags:
    - star
    - star_align
    - star_align_single_end
  files:
    - path: output/star/star/Genome
      md5sum: 323c992bac354f93073ce0fc43f222f8
    - path: output/star/star/SA
      md5sum: 3e70e4fc6d031e1915bb510727f2c559
    - path: output/star/star/SAindex
      md5sum: a94198b95a245d4f64af2a7133b6ec7b
    - path: output/star/star/chrLength.txt
      md5sum: f2bea3725fe1c01420c57fb73bdeb31a
    - path: output/star/star/chrNameLength.txt
      md5sum: c7ceb0a8827b2ea91c386933bee48742
    - path: output/star/star/chrStart.txt
      md5sum: faf5c55020c99eceeef3e34188ac0d2f
    - path: output/star/star/exonGeTrInfo.tab
      md5sum: aec6e7a1ae3fc8c638ce5a9ce9c886b6
    - path: output/star/star/exonInfo.tab
      md5sum: 42eca6ebc2dc72d9d6e6b3acd3714343
    - path: output/star/star/genomeParameters.txt
      md5sum: 05e1041cbfb7f81686e17bc80b3ddcea
    - path: output/star/star/sjdbInfo.txt
      md5sum: 1082ab459363b3f2f7aabcef0979c1ed
    - path: output/star/star/sjdbList.fromGTF.out.tab
      md5sum: d41d8cd98f00b204e9800998ecf8427e
    - path: output/star/star/sjdbList.out.tab
      md5sum: d41d8cd98f00b204e9800998ecf8427e
    - path: output/star/star/transcriptInfo.tab
      md5sum: 8fbe69abbbef4f89da3854873984dbac
    - path: output/star/test.Aligned.out.bam
      md5sum: b7f113f12ff62e09d16fa0ace290d03e
    - path: output/star/test.SJ.out.tab
      md5sum: d41d8cd98f00b204e9800998ecf8427e

- name: star align paired-end
  command: nextflow run ./tests/software/star/align -entry test_star_alignment_paired_end -c tests/config/nextflow.config
  tags:
    - star
    - star_align
    - star_align_paired_end
  files:
    - path: output/star/star/Genome
      md5sum: 323c992bac354f93073ce0fc43f222f8
    - path: output/star/star/SA
      md5sum: 3e70e4fc6d031e1915bb510727f2c559
    - path: output/star/star/SAindex
      md5sum: a94198b95a245d4f64af2a7133b6ec7b
    - path: output/star/star/chrLength.txt
      md5sum: f2bea3725fe1c01420c57fb73bdeb31a
    - path: output/star/star/chrNameLength.txt
      md5sum: c7ceb0a8827b2ea91c386933bee48742
    - path: output/star/star/chrStart.txt
      md5sum: faf5c55020c99eceeef3e34188ac0d2f
    - path: output/star/star/exonGeTrInfo.tab
      md5sum: aec6e7a1ae3fc8c638ce5a9ce9c886b6
    - path: output/star/star/exonInfo.tab
      md5sum: 42eca6ebc2dc72d9d6e6b3acd3714343
    - path: output/star/star/genomeParameters.txt
      md5sum: 05e1041cbfb7f81686e17bc80b3ddcea
    - path: output/star/star/sjdbInfo.txt
      md5sum: 1082ab459363b3f2f7aabcef0979c1ed
    - path: output/star/star/sjdbList.fromGTF.out.tab
      md5sum: d41d8cd98f00b204e9800998ecf8427e
    - path: output/star/star/sjdbList.out.tab
      md5sum: d41d8cd98f00b204e9800998ecf8427e
    - path: output/star/star/transcriptInfo.tab
      md5sum: 8fbe69abbbef4f89da3854873984dbac
    - path: output/star/test.Aligned.out.bam
      md5sum: a1f92e8dbeb954b6b8d3d7cc6b9814fb
    - path: output/star/test.SJ.out.tab
      md5sum: d41d8cd98f00b204e9800998ecf8427e