- name: phyloflash single-end
  command: nextflow run ./tests/modules/phyloflash -entry test_phyloflash_single_end -c ./tests/config/nextflow.config -c ./tests/modules/phyloflash/nextflow.config -stub-run
  tags:
    - phyloflash
  files:
    - path: output/phyloflash/test/test.SSU.collection.fasta
      md5sum: d41d8cd98f00b204e9800998ecf8427e

- name: phyloflash paired-end
  command: nextflow run ./tests/modules/phyloflash -entry test_phyloflash_paired_end -c ./tests/config/nextflow.config -c ./tests/modules/phyloflash/nextflow.config -stub-run
  tags:
    - phyloflash
  files:
    - path: output/phyloflash/test/test.SSU.collection.fasta
      md5sum: d41d8cd98f00b204e9800998ecf8427e