- name: seqtk mergepe test_seqtk_mergepe_single_end
  command: nextflow run ./tests/modules/seqtk/mergepe -entry test_seqtk_mergepe_single_end -c ./tests/config/nextflow.config -c ./tests/modules/seqtk/mergepe/nextflow.config
  tags:
    - seqtk/mergepe
    - seqtk
  files:
    - path: output/seqtk/test.processed.fastq.gz
      contains:
        - "@"
        - "+"

- name: seqtk mergepe test_seqtk_mergepe_paired_end
  command: nextflow run ./tests/modules/seqtk/mergepe -entry test_seqtk_mergepe_paired_end -c ./tests/config/nextflow.config -c ./tests/modules/seqtk/mergepe/nextflow.config
  tags:
    - seqtk/mergepe
    - seqtk
  files:
    - path: output/seqtk/test.processed.fastq.gz
      contains:
        - "@"
        - "+"