#!/usr/bin/env nextflow

nextflow.enable.dsl = 2

include { SEQTK_SAMPLE } from '../../../../software/seqtk/sample/main.nf' addParams( options: [ 'args': '-s100', 'suffix':'.sampled' ] )

/*
 * Test with single-end data
 */
workflow test_seqtk_sample_single_end {
    
    input = [ [ id:'test', single_end:true ], // meta map
              file(params.test_data['sarscov2']['illumina']['test_1_fastq_gz'], checkIfExists: true) ]

    SEQTK_SAMPLE ( input, 250000 )
}

/*
 * Test with paired-end data
 */
workflow test_seqtk_sample_paired_end {

    input = [ [ id:'test', single_end:false ], // meta map
              [ file(params.test_data['sarscov2']['illumina']['test_1_fastq_gz'], checkIfExists: true),
                file(params.test_data['sarscov2']['illumina']['test_2_fastq_gz'], checkIfExists: true) ]
            ]

    SEQTK_SAMPLE ( input, 250000 )
}