#!/usr/bin/env nextflow

nextflow.enable.dsl = 2

include { PLINK_VCF } from '../../../../modules/plink/vcf/main.nf' addParams( options: ['args':" --make-bed --biallelic-only strict --vcf-half-call missing --double-id --recode ped --id-delim \'=\' --allow-extra-chr"])

workflow test_plink_vcf {

    input = [ [ id:'test', single_end:false ], // meta map
              file(params.test_data['sarscov2']['illumina']['test_vcf'], checkIfExists: true) ]

    PLINK_VCF ( input )
}