- name: unicycler single-end
  command: nextflow run ./tests/software/unicycler -entry test_unicycler_single_end -c tests/config/nextflow.config
  tags:
    - unicycler
  files:
    - path: output/unicycler/test.scaffolds.fa
    - path: output/unicycler/test.assembly.gfa
    - path: output/unicycler/test.unicycler.log
      contains:
        - "Assembly complete"

- name: unicycler paired-end
  command: nextflow run ./tests/software/unicycler -entry test_unicycler_paired_end -c tests/config/nextflow.config
  tags:
    - unicycler
  files:
    - path: output/unicycler/test.scaffolds.fa
    - path: output/unicycler/test.assembly.gfa
    - path: output/unicycler/test.unicycler.log
      contains:
        - "Assembly complete"