name: bedtools genomecov description: Returns feature coverage for a given genome in different formats keywords: - complement tools: - bedtools: description: | Bedtools is a software package that provides with a toolset to perform genome arithmetic operations. homepage: https://bedtools.readthedocs.io/en/latest/index.html documentation: https://bedtools.readthedocs.io/en/latest/index.html doi: 10.093/bioinformatics/btq033 input: - - input_file: type: file description: Input genomic coordinates file pattern: "*.{bam}" - chrom_sizes: type: file description: Genome chromosome sizes pattern: "*.{txt,sizes}" output: - - index: type: stdout,file description: pattern: "stdout,*.{bed,bedGraph}" authors: - "@JoseEspinosa"