- name: gatk4 applybqsr test_gatk4_applybqsr
  command: nextflow run tests/software/gatk4/applybqsr -entry test_gatk4_applybqsr -c tests/config/nextflow.config
  tags:
    - gatk4
    - gatk4/applybqsr
  files:
    - path: output/gatk4/test.bam
      md5sum: 139a5ffc7601ce3cfa7a896cd381542a

- name: gatk4 applybqsr test_gatk4_applybqsr_intervals
  command: nextflow run tests/software/gatk4/applybqsr -entry test_gatk4_applybqsr_intervals -c tests/config/nextflow.config
  tags:
    - gatk4
    - gatk4/applybqsr
  files:
    - path: output/gatk4/test.bam
      md5sum: 5b1f6fa2525124c281f71e5a76d28482