- name: adapterremoval test_adapterremoval_single_end
  command: nextflow run ./tests/modules/adapterremoval -entry test_adapterremoval_single_end -c ./tests/config/nextflow.config -c ./tests/modules/adapterremoval/nextflow.config
  tags:
    - adapterremoval
  files:
    - path: output/adapterremoval/test.log
      md5sum: 2fd3d5d703b63ba33a83021fccf25f77
    - path: output/adapterremoval/test.trimmed.fastq.gz
      md5sum: 62139afee94defad5b83bdd0b8475a1f

- name: adapterremoval test_adapterremoval_paired_end
  command: nextflow run ./tests/modules/adapterremoval -entry test_adapterremoval_paired_end -c ./tests/config/nextflow.config -c ./tests/modules/adapterremoval/nextflow.config
  tags:
    - adapterremoval
  files:
    - path: output/adapterremoval/test.log
      md5sum: b8a451d3981b327f3fdb44f40ba2d6d1
    - path: output/adapterremoval/test.pair1.trimmed.fastq.gz
      md5sum: 294a6277f0139bd597e57c6fa31f39c7
    - path: output/adapterremoval/test.pair2.trimmed.fastq.gz
      md5sum: de7b38e2c881bced8671acb1ab452d78

- name: adapterremoval test_adapterremoval_paired_end_collapse
  command: nextflow run ./tests/modules/adapterremoval -entry test_adapterremoval_paired_end_collapse -c ./tests/config/nextflow.config -c ./tests/modules/adapterremoval/nextflow.config
  tags:
    - adapterremoval
  files:
    - path: output/adapterremoval/test.log
      md5sum: 7f0b2328152226e46101a535cce718b3
    - path: output/adapterremoval/test.merged.fastq.gz
      md5sum: 07a8f725bfd3ecbeabdc41b32d898dee