name: bandage_image
description: Render an assembly graph in GFA 1.0 format to PNG and SVG image formats
keywords:
    - gfa
    - graph
    - assembly
    - visualisation
tools:
    - bandage:
        description: |
            Bandage - a Bioinformatics Application for Navigating De novo Assembly Graphs Easily
        homepage: https://github.com/rrwick/Bandage
        documentation: https://github.com/rrwick/Bandage
params:
    - outdir:
        type: string
        description: |
            The pipeline's output directory. By default, the module will
            output files into `$params.outdir/<SOFTWARE>`
    - publish_dir_mode:
        type: string
        description: |
            Value for the Nextflow `publishDir` mode parameter.
            Available: symlink, rellink, link, copy, copyNoFollow, move.
    - enable_conda:
        type: boolean
        description: |
            Run the module with Conda using the software specified
            via the `conda` directive
    - singularity_pull_docker_container:
        type: boolean
        description: |
            Instead of directly downloading Singularity images for use with Singularity,
            force the workflow to pull and convert Docker containers instead.
input:
    - meta:
        type: map
        description: |
            Groovy Map containing sample information
            e.g. [ id:'test', single_end:false ]
    - gfa:
        type: file
        description: Assembly graph in GFA 1.0 format
        pattern: "*.gfa"
output:
    - meta:
        type: map
        description: |
            Groovy Map containing sample information
            e.g. [ id:'test', single_end:false ]
    - png:
        type: file
        description: Bandage image in PNG format
        pattern: "*.png"
    - svg:
        type: file
        description: Bandage image in SVG format
        pattern: "*.svg"
    - version:
        type: file
        description: File containing software version
        pattern: "*.{version.txt}"
authors:
    - "@heuermh"