name: glnexus description: merge gVCF files and perform joint variant calling keywords: - merge - gvcf tools: - glnexus: description: scalable gVCF merging and joint variant calling for population sequencing projects. homepage: https://github.com/dnanexus-rnd/GLnexus documentation: https://github.com/dnanexus-rnd/GLnexus/wiki/Getting-Started tool_dev_url: None doi: https://doi.org/10.1101/343970 licence: ['Apache-2.0'] input: - meta: type: map description: | Groovy Map containing sample information e.g. [ id:'test' ] - gvcfs: type: list description: Input genomic vcf files pattern: "*.{gvcf,gvcf.gz,g.vcf,g.vcf.gz}" output: - versions: type: file description: File containing software versions pattern: "versions.yml" - bcf: type: file description: merged BCF file pattern: "*.bcf" authors: - "@ramprasadn"