name: busco description: Benchmarking Universal Single Copy Orthologs keywords: - quality control - genome - transcriptome - proteome tools: - busco: description: BUSCO provides measures for quantitative assessment of genome assembly, gene set, and transcriptome completeness based on evolutionarily informed expectations of gene content from near-universal single-copy orthologs selected from OrthoDB. homepage: https://busco.ezlab.org/ documentation: https://busco.ezlab.org/busco_userguide.html tool_dev_url: https://gitlab.com/ezlab/busco doi: "10.1007/978-1-4939-9173-0_14" licence: ["MIT"] input: - meta: type: map description: | Groovy Map containing sample information e.g. [ id:'test', single_end:false ] - fasta: type: file description: Nucleic or amino acid sequence file in FASTA format. pattern: "*.{fasta,fna,fa,fasta.gz,fna.gz,fa.gz}" - lineage: type: value description: The BUSCO lineage to use. - busco_lineages_path: type: directory description: Path to local BUSCO lineages directory. - config_file: type: directory description: Path to BUSCO config file. output: - meta: type: map description: | Groovy Map containing sample information e.g. [ id:'test', single_end:false ] - busco_dir: type: directory description: BUSCO lineage specific output pattern: "*-busco" - versions: type: file description: File containing software versions pattern: "versions.yml" authors: - "@priyanka-surana" - "@charles-plessy" - "@mahesh-panchal"