- name: cellranger count test_cellranger_count
  command: nextflow run ./tests/modules/cellranger/count -entry test_cellranger_count -c ./tests/config/nextflow.config  -c ./tests/modules/cellranger/count/nextflow.config
  tags:
    - cellranger/count
    - cellranger
  files:
    - path: output/cellranger/genome.filtered.gtf
      md5sum: a8b8a7b5039e05d3a9cf9151ea138b5b
    - path: output/cellranger/homo_sapiens_chr22_reference/fasta/genome.fa
      md5sum: f315020d899597c1b57e5fe9f60f4c3e
    - path: output/cellranger/homo_sapiens_chr22_reference/fasta/genome.fa.fai
      md5sum: 3520cd30e1b100e55f578db9c855f685
    - path: output/cellranger/homo_sapiens_chr22_reference/genes/genes.gtf.gz
      md5sum: d1e05cd46684fa26d852b6bc9f05e31f
    - path: output/cellranger/homo_sapiens_chr22_reference/reference.json
      md5sum: 8405fd7f527a944eafb9c2909045840b
    - path: output/cellranger/homo_sapiens_chr22_reference/star/Genome
      md5sum: 897cec2d191945335f8b320438bd9135
    - path: output/cellranger/homo_sapiens_chr22_reference/star/SA
      md5sum: 7961129ac5d0e1706105be1d31c6b30c
    - path: output/cellranger/homo_sapiens_chr22_reference/star/SAindex
      md5sum: dcceb480b30cda93fb8c63ddc339093b
    - path: output/cellranger/homo_sapiens_chr22_reference/star/chrLength.txt
      md5sum: c81f40f27e72606d7d07097c1d56a5b5
    - path: output/cellranger/homo_sapiens_chr22_reference/star/chrName.txt
      md5sum: 5ae68a67b70976ee95342a7451cb5af1
    - path: output/cellranger/homo_sapiens_chr22_reference/star/chrNameLength.txt
      md5sum: b190587cae0531f3cf25552d8aa674db
    - path: output/cellranger/homo_sapiens_chr22_reference/star/chrStart.txt
      md5sum: bc73df776dd3d5bb9cfcbcba60880519
    - path: output/cellranger/homo_sapiens_chr22_reference/star/exonGeTrInfo.tab
      md5sum: 9129691eeb4ed0d02b17be879fa3edb0
    - path: output/cellranger/homo_sapiens_chr22_reference/star/exonInfo.tab
      md5sum: 209b82f0683efd03e17d2c729676554f
    - path: output/cellranger/homo_sapiens_chr22_reference/star/geneInfo.tab
      md5sum: 02a8f4575bdfcd4a42b4d8d07f2e9369
    - path: output/cellranger/homo_sapiens_chr22_reference/star/genomeParameters.txt
    - path: output/cellranger/homo_sapiens_chr22_reference/star/sjdbInfo.txt
      md5sum: 1082ab459363b3f2f7aabcef0979c1ed
    - path: output/cellranger/homo_sapiens_chr22_reference/star/sjdbList.fromGTF.out.tab
    - path: output/cellranger/homo_sapiens_chr22_reference/star/sjdbList.out.tab
    - path: output/cellranger/homo_sapiens_chr22_reference/star/transcriptInfo.tab
      md5sum: cedcb5f4e7d97bc548cd5daa022e092c
    - path: output/cellranger/sample-123/outs/filtered_feature_bc_matrix.h5
      md5sum: f8b6b7cc8248151a98c46d4ebec450c6
    - path: output/cellranger/sample-123/outs/filtered_feature_bc_matrix/barcodes.tsv.gz
    - path: output/cellranger/sample-123/outs/filtered_feature_bc_matrix/features.tsv.gz
    - path: output/cellranger/sample-123/outs/filtered_feature_bc_matrix/matrix.mtx.gz
    - path: output/cellranger/sample-123/outs/metrics_summary.csv
      md5sum: 707df0f101d479d93f412ca74f9c4131
    - path: output/cellranger/sample-123/outs/molecule_info.h5
      md5sum: a13bd7425f441c8d0eac8ffc50082996
    - path: output/cellranger/sample-123/outs/possorted_genome_bam.bam
      md5sum: 15441da9cfceea0bb48c8b66b1b860df
    - path: output/cellranger/sample-123/outs/possorted_genome_bam.bam.bai
      md5sum: 7c3d49c77016a09535aff61a027f750c
    - path: output/cellranger/sample-123/outs/raw_feature_bc_matrix.h5
      md5sum: a5290f3e300a4070f3d68a0c2e215f54
    - path: output/cellranger/sample-123/outs/raw_feature_bc_matrix/barcodes.tsv.gz
      md5sum: 5cc39ef0c7ac85f2b758b164aabf9157
    - path: output/cellranger/sample-123/outs/raw_feature_bc_matrix/features.tsv.gz
      md5sum: 07d497c7ce3e22f374af7b2cf9b97d72
    - path: output/cellranger/sample-123/outs/raw_feature_bc_matrix/matrix.mtx.gz
      md5sum: bdce94a51f16e22d40301724080b76ee
    - path: output/cellranger/sample-123/outs/web_summary.html