#!/usr/bin/env nextflow

nextflow.enable.dsl = 2

include { ENTREZDIRECT_ESEARCH as ENTREZDIRECT_ESEARCHP  } from "../../../../modules/entrezdirect/esearch/main.nf"
include { ENTREZDIRECT_ESEARCH                           } from "../../../../modules/entrezdirect/esearch/main.nf"

//
// Test with PubMed database, using date range and spell check,
// see nextflow.config file for optional definition(ext.args)
//
workflow test_entrezdirect_esearch_pubmed {
    input = [
        [ id:'test_pubmed' ], // meta map
        term = "selective serotonin reuptake inhibitor"
    ]
    database = "pubmed"

    ENTREZDIRECT_ESEARCHP ( input, database )
}

//
// Test with Genome database and species; no date range, no spell check
//
workflow test_entrezdirect_esearch_genome {
    input = [
        [ id:'test_genome' ], // meta map,
        term = "Danio+rerio"
    ]
    database = "genome"

    ENTREZDIRECT_ESEARCH ( input, database  )
}

//
// Test with Assembly database and GenBank accession; no date range, no spell check
//
workflow test_entrezdirect_esearch_assembly {
    input = [
        [ id:'test_assembly' ], // meta map
        term = "GCA_000001635.9"
    ]
    database = "assembly"

    ENTREZDIRECT_ESEARCH ( input, database )
}