- name: gatk4 collectsvevidence test_gatk4_collectsvevidence_cram
  command: nextflow run ./tests/modules/gatk4/collectsvevidence -entry test_gatk4_collectsvevidence_cram -c ./tests/config/nextflow.config  -c ./tests/modules/gatk4/collectsvevidence/nextflow.config
  tags:
    - gatk4
    - gatk4/collectsvevidence
  files:
    - path: output/gatk4/test.pe.txt.gz
      md5sum: 19f13dd0408204590b40239d14acbdde
    - path: output/gatk4/test.pe.txt.gz.tbi
      md5sum: 876170d2727a467263cbacecbd9979ee
    - path: output/gatk4/test.sr.txt.gz
      md5sum: fb9ce52193a0db3a084890bd6bbf6a64
    - path: output/gatk4/test.sr.txt.gz.tbi
      md5sum: 3e7b04492c53765e3c84d76b59e1f2c5

- name: gatk4 collectsvevidence test_gatk4_collectsvevidence_bam
  command: nextflow run ./tests/modules/gatk4/collectsvevidence -entry test_gatk4_collectsvevidence_bam -c ./tests/config/nextflow.config  -c ./tests/modules/gatk4/collectsvevidence/nextflow.config
  tags:
    - gatk4
    - gatk4/collectsvevidence
  files:
    - path: output/gatk4/test.pe.txt.gz
      md5sum: 19f13dd0408204590b40239d14acbdde
    - path: output/gatk4/test.pe.txt.gz.tbi
      md5sum: 876170d2727a467263cbacecbd9979ee
    - path: output/gatk4/test.sr.txt.gz
      md5sum: fb9ce52193a0db3a084890bd6bbf6a64
    - path: output/gatk4/test.sr.txt.gz.tbi
      md5sum: 3e7b04492c53765e3c84d76b59e1f2c5

- name: gatk4 collectsvevidence test_gatk4_collectsvevidence_allele_count
  command: nextflow run ./tests/modules/gatk4/collectsvevidence -entry test_gatk4_collectsvevidence_allele_count -c ./tests/config/nextflow.config  -c ./tests/modules/gatk4/collectsvevidence/nextflow.config
  tags:
    - gatk4
    - gatk4/collectsvevidence
  files:
    - path: output/gatk4/test.ld.txt.gz
      md5sum: c07747510deb2c2c886ee4e34d0a9c97
    - path: output/gatk4/test.ld.txt.gz.tbi
      md5sum: d1479eeb2217c2b8b4a84cf7237aca45
    - path: output/gatk4/test.pe.txt.gz
      md5sum: 19f13dd0408204590b40239d14acbdde
    - path: output/gatk4/test.pe.txt.gz.tbi
      md5sum: 876170d2727a467263cbacecbd9979ee
    - path: output/gatk4/test.sr.txt.gz
      md5sum: fb9ce52193a0db3a084890bd6bbf6a64
    - path: output/gatk4/test.sr.txt.gz.tbi
      md5sum: 3e7b04492c53765e3c84d76b59e1f2c5