- name: bwamem2 mem single-end
  command: nextflow run ./tests/software/bwamem2/mem -entry test_bwamem2_mem_single_end -c tests/config/nextflow.config
  tags:
    - bwamem2
    - bwamem2_mem
    - bwamem2_mem_single_end
  files:
    - path: output/bwamem2/test.bam
      md5sum: 354acd3b7033a2d4ee69452df18c0a4d

- name: bwamem2 mem paired-end
  command: nextflow run ./tests/software/bwamem2/mem -entry test_bwamem2_mem_paired_end -c tests/config/nextflow.config
  tags:
    - bwamem2
    - bwamem2_mem
    - bwamem2_mem_paired_end
  files:
    - path: output/bwamem2/test.bam
      md5sum: 26187528a7bde13a2a9e9dd549b9bcd0