name: fastani
description: Alignment-free computation of average nucleotide Identity (ANI)
keywords:
  - genome
  - fasta
  - ANI
tools:
  - fastani:
      description: FastANI is developed for fast alignment-free computation of whole-genome Average Nucleotide Identity (ANI).
      homepage: https://github.com/ParBLiSS/FastANI
      documentation: https://github.com/ParBLiSS/FastANI
      tool_dev_url: https://github.com/ParBLiSS/FastANI
      doi: 10.1038/s41467-018-07641-9
      licence: ["Apache-2.0"]

input:
  - meta:
      type: map
      description: |
        Groovy Map containing sample information
        e.g. [ id:'test', single_end:false ]
  - query:
      type: file
      description: Fasta file(s) to be queried
      pattern: "*.fasta"
  - reference:
      type: file
      description: Fasta file(s) to be used as reference for the query
      pattern: "*.fasta"
output:
  - meta:
      type: map
      description: |
        Groovy Map containing sample information
        e.g. [ id:'test', single_end:false ]
  - ani:
      type: file
      description: Results of the query
      pattern: "*.ani.txt"
  - versions:
      type: file
      description: File containing software versions
      pattern: "versions.yml"
authors:
  - "@abhi18av"