process HMMCOPY_GCCOUNTER { label 'process_low' // WARN: Version information not provided by tool on CLI. Please update version string below when bumping container versions. conda (params.enable_conda ? "bioconda::hmmcopy=0.1.1" : null) container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ? 'https://depot.galaxyproject.org/singularity/hmmcopy:0.1.1--h2e03b76_7' : 'quay.io/biocontainers/hmmcopy:0.1.1--h2e03b76_7' }" input: path fasta output: path "*.gc.wig" , emit: wig path "versions.yml", emit: versions when: task.ext.when == null || task.ext.when script: def args = task.ext.args ?: '' def VERSION = '0.1.1' // WARN: Version information not provided by tool on CLI. Please update this string when bumping container versions. """ gcCounter \\ $args \\ ${fasta} > ${fasta.baseName}.gc.wig cat <<-END_VERSIONS > versions.yml "${task.process}": hmmcopy: $VERSION END_VERSIONS """ }