name: seqtk_sample description: Subsample reads from FASTQ files keywords: - sample tools: - seqtk: description: Seqtk is a fast and lightweight tool for processing sequences in the FASTA or FASTQ format. Seqtk sample command subsamples sequences. homepage: https://github.com/lh3/seqtk documentation: https://docs.csc.fi/apps/seqtk/ licence: ['MIT'] input: - meta: type: map description: | Groovy Map containing sample information e.g. [ id:'test', single_end:false ] - reads: type: file description: List of input FastQ files of size 1 and 2 for single-end and paired-end data,respectively. pattern: "*.{fastq.gz}" output: - meta: type: map description: | Groovy Map containing sample information e.g. [ id:'test', single_end:false ] - version: type: file description: File containing software version pattern: "*.{version.txt}" - reads: type: file description: Subsampled FastQ files of size 1 and 2 for single-end and paired-end data,respectively. pattern: "*.{fastq.gz}" authors: - "@kaurravneet4123"