name: pangolin description: Phylogenetic Assignment of Named Global Outbreak LINeages keywords: - covid - pangolin - lineage tools: - star: description: | Phylogenetic Assignment of Named Global Outbreak LINeages homepage: https://github.com/cov-lineages/pangolin#pangolearn-description manual: https://github.com/cov-lineages/pangolin#pangolearn-description licence: ['GPL-3.0-or-later'] input: - meta: type: map description: | Groovy Map containing sample information - fasta: type: file description: | The genome assembly to be evaluated output: - report: type: file description: Pangolin lineage report pattern: "*.{csv}" - versions: type: file description: File containing software versions pattern: "versions.yml" authors: - "@kevinmenden" - "@drpatelh"