- name: bismark align single-end test workflow
  command: nextflow run ./tests/modules/bismark/align -entry test_bismark_align_single_end -c tests/config/nextflow.config
  tags:
    - bismark
    - bismark/align
  files:
    - path: output/test_single_end/test.methylated_1_bismark_bt2.bam
      md5sum: dca4ba9ff705b70446f812e59bdb1a32
    - path: output/test_single_end/test.methylated_1_bismark_bt2_SE_report.txt

- name: bismark align paired-end test workflow
  command: nextflow run ./tests/modules/bismark/align -entry test_bismark_align_paired_end -c tests/config/nextflow.config
  tags:
    - bismark
    - bismark/align
  files:
    - path: output/test_paired_end/test.methylated_1_bismark_bt2_pe.bam
      md5sum: 43943b1f30d056fcbd9ed26061ea0583
    - path: output/test_paired_end/test.methylated_1_bismark_bt2_PE_report.txt