name: ucsc_bedclip description: See http://hgdownload.cse.ucsc.edu/admin/exe/ keywords: - sort tools: - ucsc: description: Remove lines from bed file that refer to off-chromosome locations. homepage: None documentation: None tool_dev_url: None doi: "" licence: ['varies; see http://genome.ucsc.edu/license'] input: - meta: type: map description: | Groovy Map containing sample information e.g. [ id:'test', single_end:false ] - bedgraph: type: file description: bedGraph file pattern: "*.{bedgraph}" output: - meta: type: map description: | Groovy Map containing sample information e.g. [ id:'test', single_end:false ] - version: type: file description: File containing software version pattern: "*.{version.txt}" - bedgraph: type: file description: bedGraph file pattern: "*.{bedgraph}" authors: - "@drpatelh"