- name: samtools index bai
  command: nextflow run tests/software/samtools/index -entry test_samtools_index_bai -c tests/config/nextflow.config
  tags:
    - samtools
    - samtools/index
  files:
    - path: output/samtools/test_paired_end.sorted.bam.bai
      md5sum: 704c10dd1326482448ca3073fdebc2f4

- name: samtools index csi
  command: nextflow run tests/software/samtools/index -entry test_samtools_index_csi -c tests/config/nextflow.config
  tags:
    - samtools
    - samtools/index
  files:
    - path: output/samtools/test_paired_end.sorted.bam.csi
      md5sum: 3dd9e3ed959fca075b88bb8dc3cf7dbd