- name: minimap2 align single-end
  command: nextflow run ./tests/software/minimap2/align -entry test_minimap2_align_single_end -c tests/config/nextflow.config
  tags:
    - minimap2
    - minimap2_align
    - minimap2_align_single_end
  files:
    - path: ./output/minimap2/test.paf
      md5sum: 5a9648fc67c30a2c83b0ef094171faa0

- name: minimap2 align paired-end
  command: nextflow run ./tests/software/minimap2/align -entry test_minimap2_align_paired_end -c tests/config/nextflow.config
  tags:
    - minimap2
    - minimap2_align
    - minimap2_align_paired_end
  files:
    - path: ./output/minimap2/test.paf
      md5sum: e7b952be872bdbef16bf99d512690df7