process { publishDir = { "${params.outdir}/${task.process.tokenize(':')[-1].tokenize('_')[0].toLowerCase()}" } withName: DEEPVARIANT { ext.args = ' --regions=\"chr22:0-40001\" --model_type=WGS ' ext.prefix = { "${meta.id}_out" } } withName: DEEPVARIANT_INTERVALS { ext.args = '--model_type=WGS ' ext.prefix = { "${meta.id}_out" } } }