process FFQ { tag "${ids.size() == 1 ? ids[0] : "${ids[0]+'..'+ids[-1]}"}" label 'process_low' conda (params.enable_conda ? "bioconda::ffq=0.2.1" : null) container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ? 'https://depot.galaxyproject.org/singularity/ffq:0.2.1--pyhdfd78af_0': 'quay.io/biocontainers/ffq:0.2.1--pyhdfd78af_0' }" input: val ids output: path "*.json" , emit: json path "versions.yml", emit: versions when: task.ext.when == null || task.ext.when script: def args = task.ext.args ?: '' def id_list = ids.sort() def name = id_list.size() == 1 ? ids[0] : 'metadata' def prefix = task.ext.prefix ?: "${name}" """ ffq \\ ${id_list.join(' ')} \\ $args \\ > ${prefix}.json cat <<-END_VERSIONS > versions.yml "${task.process}": ffq: \$(echo \$(ffq --help 2>&1) | sed 's/^.*ffq //; s/: A command.*\$//' ) END_VERSIONS """ }