- name: samtools convert test_samtools_convert_bamtocram
  command: nextflow run tests/modules/samtools/convert -entry test_samtools_convert_bamtocram -c tests/config/nextflow.config
  tags:
    - samtools
    - samtools/convert
  files:
    - path: output/samtools/test.cram
    - path: output/samtools/test.cram.crai
    - path: output/samtools/versions.yml

- name: samtools convert test_samtools_convert_cramtobam
  command: nextflow run tests/modules/samtools/convert -entry test_samtools_convert_cramtobam -c tests/config/nextflow.config
  tags:
    - samtools
    - samtools/convert
  files:
    - path: output/samtools/test.bam
      md5sum: c262b6dc15f9b480bdb47d6d018b4b56
    - path: output/samtools/test.bam.bai
      md5sum: 6e8f5034f728401bfa841c8e70c62463
    - path: output/samtools/versions.yml