process MALTEXTRACT { label 'process_medium' conda (params.enable_conda ? "bioconda::hops=0.35" : null) container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ? 'https://depot.galaxyproject.org/singularity/hops:0.35--hdfd78af_1' : 'quay.io/biocontainers/hops:0.35--hdfd78af_1' }" input: path rma6 path taxon_list path ncbi_dir output: path "results" , emit: results path "versions.yml" , emit: versions when: task.ext.when == null || task.ext.when script: def args = task.ext.args ?: '' """ MaltExtract \\ -Xmx${task.memory.toGiga()}g \\ -p $task.cpus \\ -i ${rma6.join(' ')} \\ -t $taxon_list \\ -r $ncbi_dir \\ -o results/ \\ $args cat <<-END_VERSIONS > versions.yml "${task.process}": maltextract: \$(MaltExtract --help | head -n 2 | tail -n 1 | sed 's/MaltExtract version//') END_VERSIONS """ }