name: ssuissero description: Serotype prediction of Streptococcus suis assemblies keywords: - bacteria - fasta - streptococcus tools: - ssuissero: description: Rapid Streptococcus suis serotyping pipeline for Nanopore Data homepage: https://github.com/jimmyliu1326/SsuisSero documentation: https://github.com/jimmyliu1326/SsuisSero tool_dev_url: https://github.com/jimmyliu1326/SsuisSero doi: "" licence: ['MIT'] input: - meta: type: map description: | Groovy Map containing sample information e.g. [ id:'test', single_end:false ] - fasta: type: file description: Assembly in FASTA format pattern: "*.{fasta,fasta.gz,fa,fa.gz,fna,fna.gz,faa,faa.gz}" output: - meta: type: map description: | Groovy Map containing sample information e.g. [ id:'test', single_end:false ] - versions: type: file description: File containing software versions pattern: "versions.yml" - tsv: type: file description: Tab-delimited serotype prediction pattern: "*.{tsv}" authors: - "@rpetit3"