name: rasusa description: Randomly subsample sequencing reads to a specified coverage keywords: - coverage - depth - subsampling tools: - rasusa: description: Randomly subsample sequencing reads to a specified coverage homepage: https://github.com/mbhall88/rasusa documentation: https://github.com/mbhall88/rasusa/blob/master/README.md tool_dev_url: https://github.com/mbhall88/rasusa doi: "10.5281/zenodo.3731394" licence: ["MIT"] input: - meta: type: map description: | Groovy Map containing sample information e.g. [ id:'test', single_end:false ] - reads: type: file description: List of input paired-end FastQ files - genome_size: type: string description: Genome size of the species - depth_cutoff: type: integer description: Depth of coverage cutoff output: - meta: type: map description: | Groovy Map containing sample information e.g. [ id:'test', single_end:false ] - versions: type: file description: File containing software versions pattern: "versions.yml" - reads: type: file description: Reads with subsampled coverage pattern: "*.fastq.gz" authors: - "@thanhleviet"