- name: gatk4 getpileupsummaries test_gatk4_getpileupsummaries_just_variants
  command: nextflow run tests/modules/gatk4/getpileupsummaries -entry test_gatk4_getpileupsummaries_just_variants -c tests/config/nextflow.config
  tags:
    - gatk4/getpileupsummaries
    - gatk4
  files:
    - path: output/gatk4/test.pileups.table
      md5sum: 8e0ca6f66e112bd2f7ec1d31a2d62469
    - path: output/gatk4/versions.yml
      md5sum: 059123619f3ed8d4cd178c4390b81e69

- name: gatk4 getpileupsummaries test_gatk4_getpileupsummaries_separate_sites
  command: nextflow run tests/modules/gatk4/getpileupsummaries -entry test_gatk4_getpileupsummaries_separate_sites -c tests/config/nextflow.config
  tags:
    - gatk4/getpileupsummaries
    - gatk4
  files:
    - path: output/gatk4/test.pileups.table
      md5sum: 8e0ca6f66e112bd2f7ec1d31a2d62469
    - path: output/gatk4/versions.yml
      md5sum: 76b5388b0c5b5762d8d33e34b23f181d

- name: gatk4 getpileupsummaries test_gatk4_getpileupsummaries_separate_sites_cram
  command: nextflow run tests/modules/gatk4/getpileupsummaries -entry test_gatk4_getpileupsummaries_separate_sites_cram -c tests/config/nextflow.config
  tags:
    - gatk4/getpileupsummaries
    - gatk4
  files:
    - path: output/gatk4/test.pileups.table
      md5sum: 8e0ca6f66e112bd2f7ec1d31a2d62469
    - path: output/gatk4/versions.yml
      md5sum: 2fa51319c2b1d678ee00ab09512cf268