process { publishDir = { "${params.outdir}/${task.process.tokenize(':')[-1].tokenize('_')[0].toLowerCase()}" } withName: BIOBAMBAM_BAMMERGE { ext.args = [ "md5=1", {"md5filename=${meta.id}.md5"}, "index=1", {"indexfilename=${meta.id}.bam.bai"} ].join(" ").trim() } }