- name: fastqc single-end
  command: nextflow run ./tests/modules/fastqc/ -entry test_fastqc_single_end -c ./tests/config/nextflow.config -c ./tests/modules/fastqc/nextflow.config -c ./tests/modules/fastqc/nextflow.config
  tags:
    - fastqc
  files:
    - path: ./output/fastqc/test_fastqc.html
    - path: ./output/fastqc/test_fastqc.zip

- name: fastqc paired-end
  command: nextflow run ./tests/modules/fastqc/ -entry test_fastqc_paired_end -c ./tests/config/nextflow.config -c ./tests/modules/fastqc/nextflow.config -c ./tests/modules/fastqc/nextflow.config
  tags:
    - fastqc
  files:
    - path: ./output/fastqc/test_1_fastqc.html
    - path: ./output/fastqc/test_2_fastqc.html
    - path: ./output/fastqc/test_2_fastqc.zip
    - path: ./output/fastqc/test_1_fastqc.zip