- name: bismark genomepreparation test workflow
  command: nextflow run ./tests/modules/bismark/genomepreparation -entry test_bismark_genomepreparation -c ./tests/config/nextflow.config -c ./tests/modules/bismark/genomepreparation/nextflow.config
  tags:
    - bismark
    - bismark/genomepreparation
  files:
    - path: ./output/bismark/BismarkIndex/genome.fasta
      md5sum: 6e9fe4042a72f2345f644f239272b7e6
    - path: ./output/bismark/BismarkIndex/Bisulfite_Genome/CT_conversion/genome_mfa.CT_conversion.fa
      md5sum: 903b9f357eea4a5f36e21e78e0fe1dfa
    - path: ./output/bismark/BismarkIndex/Bisulfite_Genome/CT_conversion/BS_CT.4.bt2
      md5sum: 6c4f549575e5882ff3a97ae10ae2e7be
    - path: ./output/bismark/BismarkIndex/Bisulfite_Genome/CT_conversion/BS_CT.1.bt2
      md5sum: 10a8854e5eeb95629f46d24b0d8da70c
    - path: ./output/bismark/BismarkIndex/Bisulfite_Genome/CT_conversion/BS_CT.3.bt2
      md5sum: 4ed93abba181d8dfab2e303e33114777
    - path: ./output/bismark/BismarkIndex/Bisulfite_Genome/CT_conversion/BS_CT.2.bt2
      md5sum: bc5d407e6fce3e1cdb4b23ab2a20f707
    - path: ./output/bismark/BismarkIndex/Bisulfite_Genome/CT_conversion/BS_CT.rev.2.bt2
      md5sum: 48bf400de85cd7324fbf6bf38fe2dc95
    - path: ./output/bismark/BismarkIndex/Bisulfite_Genome/CT_conversion/BS_CT.rev.1.bt2
      md5sum: d37d586b41b6a36efb25839961d242cb
    - path: ./output/bismark/BismarkIndex/Bisulfite_Genome/GA_conversion/BS_GA.rev.1.bt2
      md5sum: 17f51e65f44477962226a83b369b2bc4
    - path: ./output/bismark/BismarkIndex/Bisulfite_Genome/GA_conversion/BS_GA.rev.2.bt2
      md5sum: d36044c5dfe37af0411f60d446585bc6
    - path: ./output/bismark/BismarkIndex/Bisulfite_Genome/GA_conversion/genome_mfa.GA_conversion.fa
      md5sum: e529375ec2039112161465b5169fcd59
    - path: ./output/bismark/BismarkIndex/Bisulfite_Genome/GA_conversion/BS_GA.4.bt2
      md5sum: b1e855685ed634daa7df8e180c9b2fc4
    - path: ./output/bismark/BismarkIndex/Bisulfite_Genome/GA_conversion/BS_GA.1.bt2
      md5sum: a6fa4068ed10872568f32568c66cb600
    - path: ./output/bismark/BismarkIndex/Bisulfite_Genome/GA_conversion/BS_GA.2.bt2
      md5sum: fc5b634e2f5137801e3801d62ad05f74
    - path: ./output/bismark/BismarkIndex/Bisulfite_Genome/GA_conversion/BS_GA.3.bt2
      md5sum: 4ed93abba181d8dfab2e303e33114777