- name: gatk4 fastqtosam test_gatk4_fastqtosam_single_end
  command: nextflow run tests/modules/gatk4/fastqtosam -entry test_gatk4_fastqtosam_single_end -c tests/config/nextflow.config  -c ./tests/modules/gatk4/fastqtosam/nextflow.config
  tags:
    - gatk4
    - gatk4/fastqtosam
  files:
    - path: output/gatk4/test.bam
    - path: output/gatk4/versions.yml

- name: gatk4 fastqtosam test_gatk4_fastqtosam_paired_end
  command: nextflow run tests/modules/gatk4/fastqtosam -entry test_gatk4_fastqtosam_paired_end -c tests/config/nextflow.config  -c ./tests/modules/gatk4/fastqtosam/nextflow.config
  tags:
    - gatk4
    - gatk4/fastqtosam
  files:
    - path: output/gatk4/test.bam
    - path: output/gatk4/versions.yml