name: bowtie_build description: Create bowtie index for reference genome keywords: - index - fasta - genome - reference tools: - bowtie: description: | bowtie is a software package for mapping DNA sequences against a large reference genome, such as the human genome. homepage: http://bowtie-bio.sourceforge.net/index.shtml documentation: http://bowtie-bio.sourceforge.net/manual.shtml arxiv: arXiv:1303.3997 licence: ["Artistic-2.0"] input: - fasta: type: file description: Input genome fasta file output: - index: type: file description: Bowtie genome index files pattern: "*.ebwt" - versions: type: file description: File containing software versions pattern: "versions.yml" authors: - "@kevinmenden" - "@drpatelh"