name: FastQC description: Run FastQC on sequenced reads keywords: - Quality Control - QC - Adapters tools: - fastqc: description: | FastQC gives general quality metrics about your reads. It provides information about the quality score distribution across your reads, the per base sequence content (%A/C/G/T). You get information about adapter contamination and other overrepresented sequences. homepage: https://www.bioinformatics.babraham.ac.uk/projects/fastqc/ documentation: https://www.bioinformatics.babraham.ac.uk/projects/fastqc/Help/ input: - - name: type: string description: Sample identifier - reads: type: file description: Input FastQ file, or pair of files output: - - report: type: file description: FastQC report pattern: "*_fastqc.{zip,html}" authors: - "@ewels" - "@FelixKrueger"