- name: filtlong test_filtlong
  command: nextflow run ./tests/modules/filtlong -entry test_filtlong -c ./tests/config/nextflow.config  -c ./tests/modules/filtlong/nextflow.config
  tags:
    - filtlong
  files:
    - path: output/filtlong/test_lr.fastq.gz
    - path: output/filtlong/test_lr.log
      contains: ["Scoring long reads"]

- name: filtlong test_filtlong_illumina_se
  command: nextflow run ./tests/modules/filtlong -entry test_filtlong_illumina_se -c ./tests/config/nextflow.config  -c ./tests/modules/filtlong/nextflow.config
  tags:
    - filtlong
  files:
    - path: output/filtlong/test_lr.fastq.gz
    - path: output/filtlong/test_lr.log
      contains: ["Scoring long reads"]

- name: filtlong test_filtlong_illumina_pe
  command: nextflow run ./tests/modules/filtlong -entry test_filtlong_illumina_pe -c ./tests/config/nextflow.config  -c ./tests/modules/filtlong/nextflow.config
  tags:
    - filtlong
  files:
    - path: output/filtlong/test_lr.fastq.gz
    - path: output/filtlong/test_lr.log
      contains: ["Scoring long reads"]