- name: ascat test_ascat
  command: nextflow run tests/modules/ascat -entry test_ascat -c tests/config/nextflow.config -stub-run
  tags:
    - ascat
  files:
    - path: output/ascat/After_correction_GC_Tumour.germline.png
    - path: output/ascat/After_correction_GC_Tumour.tumour.png
    - path: output/ascat/Before_correction_Tumour.germline.png
    - path: output/ascat/Before_correction_Tumour.tumour.png
    - path: output/ascat/Normal_alleleFrequencies_chr21.txt
    - path: output/ascat/Normal_alleleFrequencies_chr22.txt
    - path: output/ascat/test.cnvs.txt
    - path: output/ascat/test.purityploidy.txt
    - path: output/ascat/test.segments.txt
    - path: output/ascat/Tumour_alleleFrequencies_chr21.txt
    - path: output/ascat/Tumour_alleleFrequencies_chr22.txt
    - path: output/ascat/Tumour.ASCATprofile.png
    - path: output/ascat/Tumour.rawprofile.png
    - path: output/ascat/Tumour.sunrise.png