- name: pbccs test_pbccs
  command: nextflow run ./tests/modules/pbccs -entry test_pbccs -c ./tests/config/nextflow.config -c ./tests/modules/pbccs/nextflow.config
  tags:
    - pbccs
  files:
    - path: output/pbccs/alz.chunk2.bam
      md5sum: 2b6451f2d0454eb08359cb84e2e4069c
    - path: output/pbccs/alz.chunk2.bam.pbi
      md5sum: 3112cda9744e3facbf38245d41aaf080
    - path: output/pbccs/alz.chunk2.metrics.json.gz
      contains: [ 'zmws' ]
    - path: output/pbccs/alz.chunk2.report.json
      contains: [ 'Created by pbcopper' ]
    - path: output/pbccs/alz.chunk2.report.txt
      md5sum: bbc5bd7a1269345cf7a7f3d4c746024b