name: deeptools_computematrix description: calculates scores per genome regions for other deeptools plotting utilities keywords: - genome - regions - scores - matrix tools: - deeptools: description: A set of user-friendly tools for normalization and visualization of deep-sequencing data homepage: documentation: https://deeptools.readthedocs.io/en/develop/index.html tool_dev_url: https://github.com/deeptools/deepTools doi: "10.1093/nar/gku365" licence: ["GPL v3"] input: - meta: type: map description: | Groovy Map containing sample information e.g. [ id:'test' ] - bigwig: type: file description: bigwig file containing genomic scores pattern: "*.{bw,bigwig}" - bed: type: file description: bed file containing genomic regions pattern: "*.{bed}" output: - meta: type: map description: | Groovy Map containing sample information e.g. [ id:'test', single_end:false ] - matrix: type: file description: | gzipped matrix file needed by the plotHeatmap and plotProfile deeptools utilities pattern: "*.{computeMatrix.mat.gz}" - table: type: file description: | tabular file containing the scores of the generated matrix pattern: "*.{computeMatrix.vals.mat.tab}" - versions: type: file description: File containing software versions pattern: "versions.yml" authors: - "@jeremy1805" - "@emiller88" - "@drpatelh" - "@joseespinosa"