- name: cellranger mkref test_cellranger_mkref
  command: nextflow run ./tests/modules/cellranger/mkref -entry test_cellranger_mkref -c ./tests/config/nextflow.config  -c ./tests/modules/cellranger/mkref/nextflow.config
  tags:
    - cellranger/mkref
    - cellranger
  files:
    - path: output/cellranger/homo_sapiens_chr22_reference/fasta/genome.fa
      md5sum: f315020d899597c1b57e5fe9f60f4c3e
    - path: output/cellranger/homo_sapiens_chr22_reference/fasta/genome.fa.fai
      md5sum: 3520cd30e1b100e55f578db9c855f685
    - path: output/cellranger/homo_sapiens_chr22_reference/genes/genes.gtf.gz
      md5sum: 6d9b5f409bfea95022bc25b9590e194e
    - path: output/cellranger/homo_sapiens_chr22_reference/reference.json
      md5sum: 6cc817f0923062e780e6573806840cea
    - path: output/cellranger/homo_sapiens_chr22_reference/star/Genome
      md5sum: 22102926fadf5890e905ca71b2da3f35
    - path: output/cellranger/homo_sapiens_chr22_reference/star/SA
      md5sum: bcf3e1a855783105150b46c905465333
    - path: output/cellranger/homo_sapiens_chr22_reference/star/SAindex
      md5sum: b93fb07d342e6c32a00ebc4311c0ad38
    - path: output/cellranger/homo_sapiens_chr22_reference/star/chrLength.txt
      md5sum: c81f40f27e72606d7d07097c1d56a5b5
    - path: output/cellranger/homo_sapiens_chr22_reference/star/chrName.txt
      md5sum: 5ae68a67b70976ee95342a7451cb5af1
    - path: output/cellranger/homo_sapiens_chr22_reference/star/chrNameLength.txt
      md5sum: b190587cae0531f3cf25552d8aa674db
    - path: output/cellranger/homo_sapiens_chr22_reference/star/chrStart.txt
      md5sum: bc73df776dd3d5bb9cfcbcba60880519
    - path: output/cellranger/homo_sapiens_chr22_reference/star/exonGeTrInfo.tab
      md5sum: d04497f69d6ef889efd4d34fe63edcc4
    - path: output/cellranger/homo_sapiens_chr22_reference/star/exonInfo.tab
      md5sum: 0d560290fab688b7268d88d5494bf9fe
    - path: output/cellranger/homo_sapiens_chr22_reference/star/geneInfo.tab
      md5sum: 8b608537307443ffaee4927d2b428805
    - path: output/cellranger/homo_sapiens_chr22_reference/star/genomeParameters.txt
    - path: output/cellranger/homo_sapiens_chr22_reference/star/sjdbInfo.txt
      md5sum: 5690ea9d9f09f7ff85b7fd47bd234903
    - path: output/cellranger/homo_sapiens_chr22_reference/star/sjdbList.fromGTF.out.tab
      md5sum: 8760c33e966dad0b39f440301ebbdee4
    - path: output/cellranger/homo_sapiens_chr22_reference/star/sjdbList.out.tab
      md5sum: 9e4f991abbbfeb3935a2bb21b9e258f1
    - path: output/cellranger/homo_sapiens_chr22_reference/star/transcriptInfo.tab
      md5sum: 0c3a5adb49d15e5feff81db8e29f2e36