- name: atlas pmd test_atlas_pmd
  command: nextflow run ./tests/modules/atlas/pmd -entry test_atlas_pmd -c ./tests/config/nextflow.config  -c ./tests/modules/atlas/pmd/nextflow.config
  tags:
    - atlas/pmd
    - atlas
  files:
    - path: output/atlas/test.paired_end.sorted_PMD_Table.txt
      md5sum: b28a9f4784f30a711046708eb7d94642
    - path: output/atlas/test.paired_end.sorted_PMD_Table_counts.txt
      md5sum: 1aabfb83cfff6e0413f52d016c943e3e
    - path: output/atlas/test.paired_end.sorted_PMD_input_Empiric.txt
      md5sum: 8ff876f50ce05dc9aac0646a31682df0
    - path: output/atlas/test.paired_end.sorted_PMD_input_Exponential.txt
      md5sum: 2421450ef643316f4eacf5cb811e4df7