#!/usr/bin/env nextflow

nextflow.enable.dsl = 2

include { FASTK_FASTK     } from '../../../../modules/fastk/fastk/main.nf'
include { MERQURYFK_KATGC } from '../../../../modules/merquryfk/katgc/main.nf'

workflow test_merquryfk_katgc_png {

    input = [
        [ id:'test', single_end:true ], // meta map
        file(params.test_data['homo_sapiens']['illumina']['test_1_fastq_gz'], checkIfExists: true)
    ]

    FASTK_FASTK ( input )
    MERQURYFK_KATGC ( FASTK_FASTK.out.hist
        .join( FASTK_FASTK.out.ktab )
    )
}

workflow test_merquryfk_katgc_pdf {

    input = [
        [ id:'test', single_end:true ], // meta map
        file(params.test_data['homo_sapiens']['illumina']['test_1_fastq_gz'], checkIfExists: true)
    ]

    FASTK_FASTK ( input )
    MERQURYFK_KATGC ( FASTK_FASTK.out.hist
        .join( FASTK_FASTK.out.ktab )
    )
}