name: minia description: Minia is a short-read assembler based on a de Bruijn graph keywords: - assembly tools: - minia: description: | Minia is a short-read assembler based on a de Bruijn graph, capable of assembling a human genome on a desktop computer in a day. The output of Minia is a set of contigs. homepage: https://github.com/GATB/minia documentation: https://github.com/GATB/minia licence: ["AGPL-3.0-or-later"] input: - meta: type: map description: | Groovy Map containing sample information e.g. [ id:'test', single_end:false ] - reads: type: file description: Input reads in FastQ format pattern: "*.{fastq.gz, fastq}" output: - meta: type: map description: | Groovy Map containing sample information e.g. [ id:'test', single_end:false ] - contigs: type: file description: The assembled contigs pattern: "*.contigs.fa" - unitigs: type: file description: The assembled unitigs pattern: "*.unitigs.fa" - h5: type: file description: Minia output h5 file pattern: "*{.h5}" - versions: type: file description: File containing software versions pattern: "versions.yml" authors: - "@drpatelh" - "@kevinmenden"