#!/usr/bin/env nextflow

nextflow.enable.dsl = 2

include { ROARY } from '../../../modules/roary/main.nf'

workflow test_roary {

    input = [
        [ id:'test', single_end:false ], // meta map
        [
            file(params.test_data['candidatus_portiera_aleyrodidarum']['genome']['test1_gff'], checkIfExists: true),
            file(params.test_data['candidatus_portiera_aleyrodidarum']['genome']['test2_gff'], checkIfExists: true),
            file(params.test_data['candidatus_portiera_aleyrodidarum']['genome']['test3_gff'], checkIfExists: true)
        ]
    ]

    ROARY ( input )
}