name: samtools index on: push: {} pull_request: paths: tools/samtools/index* jobs: run_ci_test: runs-on: ubuntu-latest steps: # Check out the repository - uses: actions/checkout@v1 submodules: true - name: Install Nextflow run: | wget -qO- get.nextflow.io | bash sudo mv nextflow /usr/local/bin/ # Test the module - run: nextflow run ./tools/samtools/index/test/ -ansi-log false